In my opinion this list was put together TERRIBLY by the editors at TVTome. Rather than putting the proper number of episodes in a list with each of the shorts listed under it they listed each individual short, even the 30 second clip types, as a seperate episode. This makes the list abnormally large and ungainly. However I do not have time atm to rework the list so it will have to suffice for the moment.
1-1 Newsreel of the Stars #1
1-2 Theme Song #1
1-3 De-Zanitized
1-4 The Monkey Song
1-5 Nighty-Night Toon
1-6 End Credits - Standard
1-7 Yakko's World
1-8 Cookies for Einstein
1-9 Pinky and The Brain Introduction #1
1-10 Win Big
1-11 Wheel of Morality #1
1-12 Tower Escape by Cart
1-13 H.M.S. Yakko
1-14 Slappy Squirrel Introduction #1
1-15 Slappy Goes Walnuts
1-16 Yakko's Universe
1-17 Tower Escape by Balloon
1-18 Hooked on a Ceiling
1-19 Wakko Projector
1-20 Goodfeathers: The Beginning
1-21 Wheel of Morality #2
1-22 Tower Return by Ladder
1-23 Taming Of The Screwy
1-24 Flipper Parody
1-25 Temporary Insanity
1-26 Mindy and Buttons Introduction
1-27 Operation: Lollipop
1-28 What Are We?
1-29 Tower Escape by Flush
1-30 Piano Rag
1-31 When Rita Met Runt
1-32 Tower Return by Barber's Chair
1-33 The Warner's Lot Song
1-34 Randy Beaman #1 - Marshmallow
1-35 The Big Candy Store
1-36 Randy Beaman #2 - Crazy Footlicker
1-37 Bumbie's Mom
1-38 Tower Return by Catapult
1-39 Wally Llama
1-40 Pinky and The Brain Introduction #2
1-41 Where Rodents Dare
1-42 Wheel of Morality #3
1-43 King Yakko
1-44 Tower Escape by Soap Bubble
1-45 No Pain, No Painting
1-46 Les Miseranimals
1-47 Tower Return by Escalator
1-48 Tower Escape by Popcorn Skiing
1-49 Garage Sale of the Century
1-50 Fortune Cookies
1-51 West Side Pigeons
1-52 Hello Nice Warners
1-53 Hip Hippos Introduction
1-54 La Behemoth
1-55 Slappy Squirrel Introduction #2
1-56 Little Old Slappy From Pasadena
1-57 Mime Time #1 - Trapped in an Imaginary Box
1-58 La La Law
1-59 Mime Time #2 - Throwing an Imaginary Football
1-60 Cat on a Hot Steel Beam
1-61 Mime Time #3 - Pulling an Imaginary Rope
1-62 Tower Escape by Cannon
1-63 Space Probed
1-64 Battle for the Planet
1-65 Chalkboard Bungle
1-66 Hurray for Slappy
1-67 The Great Wakkorotti: The Master and his Music
1-68 Good Idea Bad Idea #1 - Playing in a Marching Band
1-69 Roll Over, Beethoven
1-70 Good Idea Bad Idea #2 - Feeding Stray Kittens
1-71 The Cat and the Fiddle
1-72 Pavlov's Mice
1-73 Chicken Boo Introduction #1
1-74 Chicken Boo-Ryshnikov
1-75 Tower Escape by Cannon and Cable Car
1-76 Nothing but the Tooth
1-77 Wheel of Morality #4
1-78 Tower Return by Magic Carpet
1-79 Meatballs or Consequences
1-80 Dot's Poetry Corner #1 - Little Miss Muffet
1-81 A Moving Experience
1-82 Four Score and Seven Migraines Ago
1-83 Wakko's America
1-84 Davy Omlette
1-85 Pursuit - Flying out of Mount Rushmore
1-86 The Flame
1-87 Alfred Hitchcock Presents Parody
1-88 Hearts of Twilight
1-89 The Boids
1-90 Guardin' the Garden
1-91 Plane Pals
1-92 Be Careful What You Eat
1-93 Yakko Sees Into the Future
1-94 Up the Crazy River
1-95 Warners Draw Blank Pictures
1-96 Ta Da Dump, Ta Da Dump, Ta Da Dump Dump Dump
1-97 Wheel of Morality #5
1-98 Yakko's World of Baldness
1-99 Opportunity Knox
1-100 Good Idea Bad Idea #3 - Roses
1-101 Wings Take Heart
1-102 Wheel of Morality #6
1-103 Disasterpiece Theater
1-104 Hercule Yakko
1-105 Rita and Runt Introduction
1-106 Home on De-Nile
1-107 A Midsummer Night's Dream
1-108 Testimonial #1 - Sy Sykman
1-109 Babblin' Bijou
1-110 Testimonial #2 - Hedda Hopper
1-111 Potty Emergency
1-112 Testimonial #3 - Italian Man
1-113 Sir Yaksalot
1-114 Dot's Poetry Corner #2 - The Shoe
1-115 You Risk Your Life
1-116 I Got Yer Can
1-117 Jockey for Position
1-118 Dot's Poetry Corner #3 - Fuzzy Wuzzy
1-119 Good Idea Bad Idea #4 - Swimming Pool
1-120 Moby or Not Moby
1-121 Good Idea Bad Idea #5 - Alpine Skiing
1-122 Mesozoic Mindy
1-123 Good Idea Bad Idea #6 - Kissing
1-124 The Good, the Boo, and the Ugly
1-125 Good Idea Bad Idea #7 - Doing Your Own Work
1-126 End Credits - Lassie Theme
1-127 Good Idea Bad Idea #8 - Halloween
1-128 Hot, Bothered and Bedeviled
1-129 Moon Over Minerva
1-130 Skullhead Boneyhands
1-131 Draculee, Draculaa
1-132 Phranken-Runt
1-133 Mime Time #4 - Gathering Imaginary Flowers
1-134 O Silly Mio
1-135 Puttin' on the Blitz
1-136 The Great Wakkorotti: The Summer Concert
1-137 Mime Time #5 - Climbing an Imaginary Mountain
1-138 Tower Escape by Water Hose
1-139 Chairman of the Bored
1-140 Planets Song
1-141 Astro-Buttons
1-142 Tower Return by Trampoline
1-143 Wakko Has a Cartoon in His Ear
1-144 Noah's Lark
1-145 Wakko Has a Cartoon in His Eye
1-146 Chicken Boo Introduction #2
1-147 The Big Kiss
1-148 Wakko Has a Cartoon in His Mouth
1-149 Hiccup
1-150 Press Conference
1-151 Clown and Out
1-152 Bubba Bo Bob Brain
1-153 Wheel of Morality #7
1-154 An Animaniacs Special Presentation
1-155 A Very Special Episode of Animaniacs
1-156 Animaniacs Test Kitchen
1-157 Mindy and The Brain Introduction
1-158 In the Garden of Mindy
1-159 Pinky and The Cat
1-160 We've Been Mixing Up the Scripts
1-161 No Place Like Homeless
1-162 Katie Kaboom Introduction
1-163 Katie Ka-Boo
1-164 We Found This Old Computer
1-165 Dotty the Squirrel Introduction
1-166 Baghdad Cafe
1-167 Wheel of Morality #8
1-168 Critical Condition
1-169 Pursuit - Airplane
1-170 The Three Muska-Warners
1-171 Dough Dough Boys
1-172 Boot Camping
1-173 General Boo-Regard
1-174 Spellbound
1-175 Dot's Poetry Corner #4 - Ode to Jack
1-176 Good Idea Bad Idea #9 - Cleaning Up
1-177 Smitten With Kittens
1-178 Dot's Poetry Corner #5 - This Little Piggy
1-179 Alas, Poor Skullhead
1-180 White Gloves
1-181 Good Idea Bad Idea #10 - Playing an Accordion
1-182 Wheel of Morality #9
1-183 Casablanca Parody
1-184 Tower Escape by Tower Elevator
1-185 Fair Game
1-186 Pursuit - Office Elevators
1-187 The Slapper
1-188 Puppet Rulers
1-189 Wheel of Morality #10
1-190 Tower Return by Tower Elevator
1-191 Buttermilk, It Makes a Body Bitter
1-192 Broadcast Nuisance
1-193 Good Idea Bad Idea #11 - Served in Bed
1-194 The Goodfeathers Introduction
1-195 Raging Bird
1-196 Good Idea Bad Idea #12 - Whistling
1-197 Animator's Alley #1 - Pies
1-198 Animator's Alley #2 - Fish Lips
1-199 Can't Buy A Thrill
1-200 Animator's Alley #3 - Bunion Boy
1-201 Hollywoodchuck
1-202 Animator's Alley #4 - Asleep
1-203 Of Nice and Men
1-204 What a Dump!
1-205 Pursuit - Running Towards Camera
1-206 Survey Ladies
1-207 Useless Fact #1 - Termites
1-208 The Senses Song
1-209 Useless Fact #2 - Eskimos
1-210 Dot's Poetry Corner #6 - Humpty Dumpty
1-211 The World Can Wait
1-212 Useless Fact #3 - Shrimp
1-213 Kiki's Kitten
1-214 Useless Fact #4 - Starfish
1-215 Mary Tyler Moore Parody
1-216 Windsor Hassle
1-217 Queen Mother Anviled
1-218 ...And Justice for Slappy
1-219 Wheel of Morality #11
1-220 Turkey Jerkey
1-221 Wild Blue Yonder
1-222 Wheel of Morality #12
1-223 Pursuit - Coming Out of a Manhole
1-224 Video Review
1-225 When Mice Ruled The Earth
1-226 Wheel of Morality #13
1-227 Carol Burnett Show Parody
1-228 Newsreel of the Stars #2
1-229 Dot's Poetry Corner #7 - Requiem for a Lamb
1-230 Mobster Mash
1-231 Mime Time #6 - Lifting an Imaginary Barbell
1-232 Lake Titicaca
1-233 Randy Beaman #3 - Piranha Cat
1-234 Icebreakers
1-235 Good Idea Bad Idea #13 - Drinking Fresh Milk
1-236 Slippin' on the Ice
1-237 Snowy Titles
1-238 'Twas the Day Before Christmas
1-239 Good Idea Bad Idea #14 - Christmas Carols
1-240 Jingle Boo
1-241 The Great Wakkorotti: The Holiday Concert
1-242 Good Idea Bad Idea #15 - Finding Easter Eggs
1-243 Toy Shop Terror
1-244 Newsreel of the Stars #3
1-245 A Christmas Plotz
1-246 Little Drummer Warners
1-247 Branimaniacs
1-248 The Warners and the Beanstalk
1-249 Frontier Slappy
1-250 Ups and Downs
1-251 The Brave Little Trailer
1-252 Yes, Always
1-253 Drive-Insane
1-254 Girlfeathers
1-255 I'm Cute
1-256 Randy Beaman #4 - Pop Rocks
1-257 Brain meets Brawn
1-258 Meet Minerva
1-259 Randy Beaman #5 - Hitchhiker
1-260 Gold Rush
1-261 Pursuit - Mailbox with Elephant
1-262 A Gift of Gold
1-263 Dot's Quiet Time
1-264 French Theme
1-265 Schnitzelbank
1-266 The Helpinki Formula
1-267 Les Boutons et Le Ballon
1-268 Kung Boo
1-269 Of Course You Know, This Means Warners
1-270 Up a Tree
1-271 Wakko's Gizmo
1-272 Good Idea Bad Idea #16 - Circus
1-273 Oh, Oh, Ethel
1-274 Ink Blot Test
1-275 Meet John Brain
1-276 Smell Ya Later
1-277 Spike
1-278 Wheel of Morality #14
1-279 Tower Escape by Condor
1-280 Ragamuffins
1-281 Woodstock Slappy
1-282 Tower Return by Lasso
1-283 Pursuit - Running Around a Corner
1-284 Karaoke-dokie
1-285 Cranial Crusader
1-286 The Chicken Who Loved Me
1-287 Dot's Poetry Corner #8 - Jack Sprat
1-288 Baloney and Kids
1-289 Super Buttons
1-290 Katie Ka-Boom: The Driving Lesson
1-291 Dot's Poetry Corner #9 - Thirty Days
1-292 Randy Beaman #6 - Dracula
1-293 Good Idea Bad Idea #17 - Going Trick or Treating
1-294 Scare Happy Slappy
1-295 Randy Beaman #7 - Tan
1-296 Witch One
1-297 Randy Beaman #8 - Lee Press-on Nails
1-298 MacBeth
1-299 With Three You Get Eggroll
1-300 Mermaid Mindy
1-301 Katie Ka-Boom: Call Waiting
1-302 Randy Beaman #9 - Baloney
1-303 Pursuit - Mini-Mart Rides
1-304 Lookit the Fuzzy Heads
1-305 Dot's Poetry Corner #10 - Old King Cole
1-306 No Face Like Home
1-307 Dot's Poetry Corner #11 - Ode to a Veggie
1-308 Randy Beaman #10 - Dog Food
1-309 Wheel of Morality #15
1-310 My Father the Tuna
1-311 The Warners 65th Anniversary Special
   
2-1 Dot's Poetry Corner #12 - The Teapot
2-2 Theme Song #2
2-3 Pursuit - Airplane Around a Corner
2-4 Take My Siblings Please
2-5 Dot's Poetry Corner #13 - Roses are Red
2-6 The Mindy 500
2-7 Morning Malaise
2-8 Dot's Poetry Corner #14 - That Poem That I Wrote
2-9 Wheel of Morality #16
2-10 Mime Time #7 - Swimming in an Imaginary Ocean
2-11 We're No Pigeons
2-12 Mime Time #8 - Walking an Imaginary Dog
2-13 Whistle Stop Mindy
2-14 Mime Time #9 - Driving an Imaginary Car
2-15 Katie Ka-Boom: The Broken Date
2-16 Mime Time #10 - Pitching at an Imaginary Baseball Game
2-17 Wheel of Morality #17
2-18 Randy Beaman #11 - Face
2-19 Miami Mama-Mia
2-20 Mime Time #11 - Riding on an Imaginary Subway
2-21 Pigeon on the Roof
2-22 Coo
2-23 Randy Beaman #12 - Sneeze
2-24 Good Idea Bad Idea #18 - Balloons
2-25 Good Idea Bad Idea #19 - Hobby
2-26 Good Idea Bad Idea #20 - Chilli Dog
2-27 Good Idea Bad Idea #21 - McLean
2-28 Wheel of Morality #18
2-29 Randy Beaman #13 - Get Lost
2-30 I'm Mad
2-31 Mime Time #12 - Finding an Imaginary Coin
2-32 Bad Mood Bobby
2-33 Randy Beaman #14 - Baths
2-34 Katie Ka-Boom: The Blemish
2-35 Good Idea Bad Idea #22 - Penny
2-36 Good Idea Bad Idea #23 - Dog Bath
2-37 Good Idea Bad Idea #24 - Playing Horsey
2-38 Good Idea Bad Idea #25 - Surprise Party
2-39 Good Idea Bad Idea #26 - Cops & Robbers
2-40 Good Idea Bad Idea #27 - Catch with Grandfather
2-41 Good Idea Bad Idea #28 - Playing Scales
2-42 Randy Beaman #15 - Corn Flakes
2-43 Fake
   
3-1 Previously On Animaniacs
3-2 Theme Song #3
3-3 Deduces Wild
3-4 Slappy & Skippy Introduction
3-5 Rest In Pieces
3-6 U.N. Me
3-7 Super Strong Warner Siblings
3-8 Nutcracker Slappy
3-9 Wakko's New Gookie
3-10 A Quake, A Quake!
3-11 Variety Speak
3-12 Three Tenors and You're Out
3-13 Bingo
3-14 Finale
3-15 A Hard Day's Warners
3-16 Good Idea Bad Idea #29 - Buying a Pair of Shoes
3-17 Gimme A Break
3-18 Good Idea Bad Idea #30 - Climbing a Mountain
3-19 The Please Please Please Get a Life Foundation
3-20 The Tiger Prince
3-21 All the Words in the English Language: Aardvark to Afraid
3-22 The Kid In The Lid
3-23 All the Words in the English Language: Level to Lute
3-24 Method To Her Madness
3-25 All the Words in the English Language: Zachary to Zaire
3-26 Gimme The Works
3-27 Buttons in Ows
3-28 Hercules Unwound
3-29 Wheel of Morality #19
3-30 This Pun For Hire
3-31 Star Truck
3-32 Go Fish
3-33 Randy Beaman #16 - Ketchup
3-34 Multiplication
3-35 Theme Song #4
3-36 The Presidents Song
3-37 Don't Tread On Us
3-38 The Flame Returns
3-39 The Sound of Warners
3-40 Chicken Boo Introduction #3
3-41 Yabba Dabba Boo
3-42 The Twelve Days of Christmas
3-43 My Mother the Squirrel
3-44 The Party
3-45 Oh Say Can You See?
3-46 Prehistoric Warners
3-47 The Girl with the Googily Goop
3-48 Gunga Dot
3-49 Belly Button Blues
3-50 Wakko's Spacewalk
3-51 Randy Beaman #17 - Carrots
3-52 Dot's Entertainment
3-53 Soccer Coach Slappy
3-54 Valuable Lesson
3-55 Our Final Space Cartoon, We Promise
3-56 Wakko's 2-note Song
3-57 Panama Canal
3-58 Hello Nurse
3-59 The Ballad of Magellan
3-60 The Return of the Great Wakkorotti
3-61 The Big Wrap Party Tonight
   
4-1 One Flew Over the Cuckoo Clock
4-2 End Credits - Slappy's Tree
4-3 Cutie and The Beast
4-4 Boo Happens
4-5 Noël
4-6 Cold Ending # 1
4-7 Animani-rats
4-8 Jokahontas
4-9 Boids on the Hood
4-10 Mighty Wakko at the Bat
4-11 A Very Very Very Very Special Show
4-12 Night of the Living Buttons
4-13 Soda Jerk
4-14 From Burbank with Love
4-15 Anchors A-Warners
4-16 When You're Traveling...
4-17 Flavio Commercial - Choco-Dot Candies
4-18 Flavio Commercial - Soak Cola
4-19 Papers for Pappa
4-20 Flavio Commercial - Calvin Klein Parody
4-21 Amazing Gladiators
4-22 Pinky and the Ralph
4-23 Ten Short Films About Wakko Warner
4-24 No Time for Love
4-25 The Boo Network
4-26 Pitter Patter of Little Feet
4-27 Mindy in Wonderland
4-28 Ralph's Wedding
   
5-1 Moosage in a Bottle
5-2 Back in Style
5-3 Bones in the Body
5-4 It
5-5 Dot - The Macadamia Nut
5-6 Bully for Skippy
5-7 Cute First (Ask Questions Later)
5-8 Acquaintances
5-9 Here Comes Attila
5-10 Boo Wonder
5-11 The Brain's Apprentice
5-12 Punchline - Why did the Chicken Cross the Road?
5-13 Punchline - The Chicken or the Egg?
5-14 The Christmas Tree
5-15 Hooray for North Hollywood (1)
5-16 Hooray for North Hollywood (2)
5-17 There's Only One of You
5-18 L.A. Dot
5-19 The Carpool
5-20 Sunshine Squirrels
5-21 Katie KaBoom: Prom Night
5-22 Magic Time
5-23 The Scoring Session
5-24 Star Warners
5-25 The Animaniacs Suite
5-26 Birds on a Wire
5-27 Animaniacs Super Special
   
V-1 Wakko's Wish